Update

Sadly through my research and with the help of Prof. Kim, we were unable to find a solution to the problem I am having with combining the two scripts. It seems that the MEL scripting language and Maya in general does not like playing with the combination of MEL, Bash, and PHP scripts. As of right now, until I find a work around I will have to leave it as two separate scripts, which isn't a deal breaker. I have also acquired a old LCD monitor that I am going to use to make a installation rig for the thesis. The bad news is that it is broken, so I will have to take a look on the inside to see if there is anything I can do to fix it.